PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 212aa    MW: 22975.3 Da    PI: 7.5871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.3e-0983123954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Vradi01g11070.1  83 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 123
                      699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.95174123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1479134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-1180128No hitNo description
Gene3DG3DSA:4.10.280.104.7E-1280131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1280129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-684123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MHQTPPTTTS SVVAPPSSSG FLGDILGVHS MEEDEEPEEE LGAMKEMMYK IAAMQPVDID  60
PATIRKPKRR NVRISDDPQS VAARHRRERI SEKIRILQRL VPGGTKMDTA SMLDEAIRYV  120
KFLKRQIRLL QSIPHPSQPP QCIGFATTNA STLLLAPSCD WSFAPNVLLS STAVTAATAS  180
SSSMDMPAGL GFDGHGHACD GEGHVVRRKV C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510374.11e-148PREDICTED: transcription factor HEC3-like
SwissprotO813137e-48IND_ARATH; Transcription factor IND
TrEMBLA0A0L9TJ561e-130A0A0L9TJ56_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SWB71e-130A0A0S3SWB7_PHAAN; Uncharacterized protein
STRINGGLYMA05G32410.21e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-48bHLH family protein